This is in a common rail right?
Try playing around with the timing if you can.
Got scheid 150s in my vp and they haze like crazy.
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I have 260hp injectors in my truck, and now I'm on my second set of twins. First set was a 62/65/14 over a GT4202. They would start to light at 1500-1600 rpm. No rattle , and I ran this setup for 3 almost 4 years.
Flash forward to today, I have a new set of twins on 63/74/14 over a 80/96/1.10. New set starts to light at 1800 rpm, and you guessed it the truck now has rattle until it builds a little boost.
The only difference for me was the size of the twins. I think the big lazy turbos are really the problem and injectors are getting the blame for all the rattle.
Crazy we run a secondary almost as large as your primary, and don't get any rattle at all... Our setup also starts to light at about 1900rpm, sounds like tuning to me.
It won't tune out for me with any of the settings I've tried that are available to me with the Smarty. I guess i see what you are saying with the tuning though... I have EFI, I'm just patiently waiting for it to become available for my year.