We are almost sold out right now with a lot of good performance feedback. I suggest tuning and verifying cam centerline, timing, lash, etc.
I know you want to call it the heads fault, but everthing is not identical. You have a .020" over head gasket, which I have seen cause exactly what you are seeing. Also to dial everything in exactly with what you had before you needed to check your injector protrusion into the cylinder, and then match it with our head factoring for the .020" over gasket. Do this and run the same gasket thickness as before, and verify piston protrusion before and after, and then your statement that everything is identical except for the hamilton parts would be much more accurate.
Our heads move air, a lot more air. I have written numerous times that just bolting it on and thinking you are going to increase 150hp is not logical. As much as people in the diesel community hate to go about things in a logical manner, the scientific method is the only way to verify identify your issue. You just change 10 variables and said that you only changed two.
You need to address these issues.
Cam centerline
lash
piston protrusion before and after
head gasket thickness before and after
Injector depth before and after
injection pump timing before and after
And before you bash me online, try calling me.
If you are unable or unwilling to verify all of the things listed, I would rather give you a refund than be forced to prove the issue is not with my head.
The .020" headgasket is my guess, Bigger ports with less compression, considerably lower port velocity and will make engines lazy down low. Add to that, with less squeeze in the cylinder efficiency drops considerably.